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Vulnerabilities

3 CVEs · NVD, GitHub Advisories, CISA KEV, FIRST EPSS, GitHub PoC repos

CVEVulnerabilityCVSSEPSSFlagsAffectedExposurePublished
CVE-2026-31973
+1 in the same advisory: …31972
SAMtools is a program for reading, manipulating and writing bioinformatics file formats.

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

NVD description · AI analysis pending
6.9<1%
  • samtools samtools
CVE-2022-21126
The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir

The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir() function in util/IOUtil.java not checking for the existence of the temporary directory before attempting to create it.

NVD description · AI analysis pending
7.8<1% PoC
  • samtools htsjdk