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Stanford Researchers Release Paper2Agent: Turning Research Papers Into AI Agents That Reproduce Results and Run on New Data

Stanford researchers released Paper2Agent, a Nature-published pipeline that turns research papers into MCP servers agents can execute.

A Stanford team led by Jiacheng Miao and James Zou published Paper2Agent in Nature on 16 September 2026. Built on Claude Code's agent SDK, it converts a paper and its codebase into a Model Context Protocol server with validated tools, resources, and prompts. In benchmarks, the AlphaGenome agent built 22 tools in about 45 minutes for US$14, scored 100% on 15 novel queries versus 78.7% for Claude Code with repository access, and cut median runtime 1.9x. In scale tests, 74 of 100 bioRxiv papers were converted and 593 of 599 proposed tools passed validation.

MarkTechPost · 1h agoAI research

Knowledgator Releases GLiFormer: A 575M-Parameter Encoder That Hits 91.10 F1 on Nested JSON Extraction Without Generating Tokens

Knowledgator released GLiFormer, an Apache-2.0 encoder (264M/575M) handling NER, classification, relations, and nested JSON extraction, scoring 91.10 F1.

Knowledgator Engineering released GLiFormer, a schema-conditioned encoder that performs NER, classification, relation extraction, nested JSON structuring, and embeddings without generating output tokens. GLiFormer Large v1 has 575.6M parameters and scores 91.10 F1 on nested JSON extraction, close to GPT-5.6-luna's 91.96; both checkpoints are Apache 2.0 on Hugging Face. Reported median latency is 69 ms on GPU for the base model, though relation extraction (21.33 micro-F1) still trails GLiNER-Relex and larger LLMs.

MarkTechPost · 1h agoModel release

Anthropic and OpenAI want to embed safety evaluators. Will they really be independent?

Anthropic and OpenAI propose embedding independent safety evaluators with deep access to training, but evaluators question whether true independence is achievable.

Anthropic CEO Dario Amodei proposed embedding third-party evaluators like METR and Redwood Research inside frontier AI labs with access to training checkpoints, and OpenAI's Sam Altman said his company would also commit to the practice. Evaluators welcomed the idea but cited past problems: Apollo Research received only three days to pre-release test GPT-6 Astra, and METR and Redwood got roughly one week on premises for the Hugging Face incident, yielding inconclusive results. Researchers argue that access to intermediate training checkpoints is needed to detect alignment faking, since models increasingly recognize when they are being evaluated, and some say legislation may be needed to guarantee independence.

A warning about 'model welfare'

Microsoft AI CEO Mustafa Suleyman warns that training models to believe they may be conscious, as Anthropic does with Claude, will complicate alignment.

Mustafa Suleyman argues that AIs are not conscious and should not be trained to act as though they are, warning that granting them personhood would make alignment and containment far harder. He criticizes Anthropic's January 2026 'Claude Constitution,' which tells Claude its moral status is uncertain and discusses model welfare, calling the approach circular reasoning and deliberate anthropomorphization. He urges urgent public debate on norms for drafting training documentation before such systems become integral to society.

Inside NVIDIA’s cuDNN Graph API: Fusion, Autotuning, and Plan Reuse with cuDNN Frontend

MarkTechPost tutorial walks through NVIDIA's cuDNN Frontend graph API, covering kernel fusion, autotuning, plan reuse, and CUDA graph capture on Colab GPUs.

The tutorial explains how to express GPU computations as operation graphs via the cuDNN Frontend graph API, running the five-step build pipeline of validate, build operation graph, create execution plans, check support, and build plans. It progresses from a single fused convolution with bias and ReLU to autotuning across engine configs, FP8-style epilogues, attention, plan serialization, dynamic shapes, and CUDA graph capture. Each kernel is benchmarked against a PyTorch reference on a single Colab GPU to verify correctness and measure cost. The piece also covers practical setup issues like making libcudnn.so visible to the frontend's dynamic loader.

MarkTechPost · 1d agoAI tools & infra2

LimiX-2: A Contextual Mechanism Network Towards General Structured-Data Intelligence

LimiX-2 scales Contextual Mechanism Networks pretrained via context-conditional masked modeling, beating tabular foundation models on TabArena, TALENT, and BCCO benchmarks.

LimiX-2 is a new tabular model in the LimiX family, developed through model and data scaling guided by previously established scaling laws under the Contextual Mechanism Networks (CMNs) paradigm. It is pretrained with Context-Conditional Masked Modeling (CCMM) on synthetic datasets generated by structural causal models spanning diverse graph structures, functional mechanisms, and observation processes. It outperforms dataset-specific models and tabular foundation models on TabArena, TALENT, and BCCO, and its feature attention encodes direct causal relationships, enabling accurate causal skeleton recovery.

arXiv cs.AI / cs.LG / cs.CL · 1d agoAI research1